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Characterizing molecular recognition and regulation events involving signalosomes in the retina

#retinasignalosomes

Description

One of the outstanding mysteries of visual perception lies in the precise functions of the intricate molecular circuits of the retina. Synaptic contacts between different cell types enable transformation of light signals into fine chemical messages, ultimately reaching our brain. However, for many of these key macromolecules, our current knowledge is extremely limited. In our project we use the most advanced in vitro technologies to characterize the structures, interactions and functions of recently discovered protein networks called ” signalosomes”, essential for visual perception, particularly for night vision. Our aim is to collect insights to provide an accurate molecular mapping of the interactions underlying these fundamental proteins and, at the same time, to elucidate the molecular defects causing rare untreatable vision diseases such as congenital stationary night blindness. We expect that our results will pave the way to exciting new opportunities for usage and harnessing of these molecules in future bio-medical applications.

schematic of our investigation targets in the retina, at the synaptic interface between photoreceptors and bipolar cells

The figure shows a summary scheme of our investigation targets in the retina, at the synaptic interface between photoreceptors and bipolar cells.

Pikachurin and its interactions with GPR179 – In the retina, photoreceptors form synaptic contacts with ON-type bipolar cells to ensure efficient synaptic transmission. The extracellular matrix proteoglycan Pikachurin, a distroglycan ligand with features strongly resembling to those of its widespread homolog agrin, connects a presynaptic complex on the photoreceptor with the postsynaptic orphan receptor GPR179. We tackled the structural and functional characterization of Pikachurin N- and C-terminal fragments, and in collaboration with the group of Kirill Martemyanov at Scripps Florida we studied the extracellular molecular contacts enabling the interaction between Pikachurin C-terminal EGF3 domain and the ectodomain of GPR179. Our findings provide insights into how pikachurin precisely positions GPR179 at synapses to ensure neurotransmission.

Cartoon representation of the CryoEM reconstruction of the extracellular fragments of dimeric GPR179 (blue and green) forming 2:2 complexes with the C-terminal EGF3 domains of human Pikachurin

The figure shows a cartoon representation of the CryoEM reconstruction of the extracellular fragments of dimeric GPR179 (blue and green) forming 2:2 complexes with the C-terminal EGF3 domains of human Pikachurin.

Resources

PDB Files:

  • 7ZCB – Crystal structure of Human Pikachurin/EGFLAM N-terminal Fibronectin-III (1-2) domains
  • 7ZC9 – Crystal structure of Human Pikachurin/EGFLAM C-terminal Laminin-G domain (LG3)
  • 8D1B – CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin

EMDB Files:

  • EMD-27121 – CryoEM structure of human orphan GPCR GPR179 in complex with extracellular matrix protein pikachurin

SASBDB Files:

  • SASDN78 – Pikachurin N-terminal FnIII(1-2) fragment (SEC-SAXS)
  • SASDN68 – Pikachurin C-terminal LG3 domain (SEC-SAXS)
  • SASDN88 – Pikachurin C-terminal EGF-LG3 fragment (SEC-SAXS)

Publications and Dissemination

Publications

Press releases

  • Joint University of Pavia press release about Patil et al., Science Signaling (2023): PDF in Italian

Projects

Velux Stiftung

Velux Stiftung, Ophthalmology Grant: "Molecular Characterization of Rod Vision Circuits in Health and Disease" – Project code 1375

GAHF CDA

Giovanni Armenise Harvard Foundation, Career Development Award: "Molecular Recognition at the Neuromuscular Synapse" – Project code CDA 2013