Data Repository

This section contains an archive of raw data datasets, supplementary materials and additional files accompanying some of our publications that are not directly downloadable from the publisher's website.


dataset Raw X-ray diffraction Images
Described in Dzurova L. et al., Proteins (2015)

  • Dataset for PDB ID 5AJT: tgz Archive (1.5 GB)
  • Dataset for PDB ID 5AJU: tgz Archive (1.3 GB)
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    model Homology model of the VPS33B-VIPAR complex
    Described in Banushi B. et al., Nature Communications (2016)

  • Send Request
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    model Homology model of B. cenocepacia CepI
    Described in Scoffone V.C. et al., Scientific Reports (2016)

  • Send Request
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    model Homology model of B. cenocepacia Glutamate Racemase
    Described in Israylova A. et al., PlosOne (2016)

  • Send Request
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    dataset Raw X-ray diffraction Images
    Described in Scietti L. et al, Nature Communications (2018)

  • Dataset for PDB ID 6FXK: tgz Archive (0.7 GB)
  • Dataset for PDB ID 6FXM: tgz Archive (6.5 GB)
  • Dataset for PDB ID 6FXR: tgz Archive (7.5 GB)
  • Dataset for PDB ID 6FXT: tgz Archive (3.6 GB)
  • Dataset for PDB ID 6FXX: tgz Archive (8.0 GB)
  • Datasets for PDB ID 6FXY: "Send Request (57 datasets, over 100 GB)"
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    secsaxs Raw frames from SEC-SAXS runs
    Described in Scietti L. et al, Nature Communications (2018)

  • Dataset for SASBDB ID SASDDW4: tgz Archive (27.0 MB)
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    dataset Raw X-ray diffraction Images
    Described in Falchetto M., Ciossani G., et al., Ins Mol Biol (2018)

  • Dataset for PDB ID 6HHE: tgz Archive (3 GB)
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    model Model of (E,E)-alpha-farnesene bound to CcapOBP22
    Described in Falchetto M., Ciossani G., et al., Ins Mol Biol (2018)

  • Send Request
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    dataset Raw X-ray diffraction Images
    Described in Canciani A., Catucci G., Forneris F., Prot Sci (2019)

  • Dataset for PDB ID 6H8M: tgz Archive (6.7 GB)
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    dataset Raw X-ray diffraction Images
    Described in Ongaro T., Guarino S.R., et al., J Struct Biol (2021)

  • Dataset for PDB ID 7AH1: tgz Archive (1.6 GB)
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    secsaxs Raw frames from SEC-SAXS runs
    Described in Ongaro T., Guarino S.R., et al., J Struct Biol (2021)

  • Dataset for SASBDB ID SASDJN8: tgz Archive (33.0 MB)
  • Dataset for SASBDB ID SASDJP8: tgz Archive (22.0 MB)
  • Dataset for SASBDB ID SASDJQ8: tgz Archive (23.0 MB)
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    negst Raw negative stain EM micrographs, 3D map and PDB model
    Described in Ongaro T., Guarino S.R., et al., J Struct Biol (2021)

  • Dataset for IL12-L19L19 immunocytokine: tgz Archive (68.0 MB)
  • Dataset for L19L19-IL2 immunocytokine: tgz Archive (24.0 MB)
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    dataset Raw X-ray diffraction Images
    Described in Guarino, S.R., et al., Acta Cryst F (2022)

  • Dataset for PDB ID 7TNG: tgz Archive (2.9 GB)
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    dataset Raw X-ray diffraction Images
    Described in Mattoteia, D., Chiapparino, A., Fumagalli, M., et al. Int. J. Mol. Sci. (2023)

  • Dataset for PDB ID 6TEZ: tgz Archive (8.4 GB)
  • Dataset for PDB ID 8ONE: tgz Archive (3.1 GB)
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    dataset Raw X-ray diffraction Images
    Described in Patil, et al. Sci. Signal. (2023)

  • Dataset for PDB ID 7ZCB: tgz Archive (1.3 GB)
  • Dataset for PDB ID 7ZC9: tgz Archive (4.9 GB)
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    secsaxs Raw frames from SEC-SAXS runs
    Described in Patil, et al. Sci. Signal. (2023)

  • Dataset for SASBDB ID SASDN68: tgz Archive (21.0 MB)
  • Dataset for SASBDB ID SASDN78: tgz Archive (21.0 MB)
  • Dataset for SASBDB ID SASDN88: tgz Archive (21.0 MB)
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    hdx_ms Raw data from HDX-MS
    Described in Patil, et al. Sci. Signal. (2023)

  • Raw HDX dataset 1 for GPR179-Pikachurin EGF3-LG3 complex: 40 files (external download)
  • Raw HDX dataset 2 for GPR179-Pikachurin EGF3-LG3 complex: 40 files (external download)
  • Raw HDX dataset 3 for GPR179-Pikachurin EGF3-LG3 complex: 34 files (external download)
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    dataset Raw X-ray diffraction Images
    Described in De Marco, Rai, Scietti, et al. Nature Communications (2025)

  • Dataset for PDB ID 9EVJ: tgz Archive (8.1 GB)
  • Dataset for PDB ID 9EVK: tgz Archive (23.0 GB)
  • Dataset for PDB ID 9EVL: tgz Archive (23.0 GB)
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    secsaxs Raw frames from SEC-SAXS runs
    Described in De Marco, Rai, Scietti, et al. Nature Communications (2025)

  • Dataset for SASBDB ID SASDVZ2: tgz Archive 13.0 MB)
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    md Raw data from MD simulations
    Described in De Marco, Rai, Scietti, et al. Nature Communications (2025)

  • MD simulation data, including initial coordinate files, simulation input files, and final output coordinate files : Dataset on ZENODO (external download)
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    xl_ms Raw data from XL-MS
    Described in De Marco, Rai, Scietti, et al. Nature Communications (2025)

  • Raw XL-MS dataset for GLT25D1/COLGALT1-LH3/PLOD3 complex: Project PXD061021 on PRIDE (external download)
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    native_ms Raw data from Native-MS
    Described in De Marco, Rai, Scietti, et al. Nature Communications (2025)

  • Raw Native-MS dataset for GLT25D1/COLGALT1: Project MSV000097322 on MASSIVE (external download)
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