SiMPLOD v. 0.6.2 alpha

LH1 ARG370ARG

SiMPLOD ID
  This is the unique identifier for this mutation in the SiMPLOD database. Please use this identifier when linking information described in SiMPLOD about this mutation.
SiMPLOD1-37

Isoenzyme
  Follow the links to gather information about the LH1 isoenzyme
Lysyl Hydroxylase 1 (human) - UniProt - Full Info

Nucleotide mutation
  Follow the links to explore annotated information about the significance of the PLOD1 c.1110G>A mutation
PLOD1 NM_000302.2:c.1110G>A - NCBI RefSeq
NCBI SNP: rs148644646
NCBI ClinVar: 520111

Mutation type
  Current information about the clinical implications of the mutation
Likely benign

Clinical Databases
  Link to clinical databases, including OMIM (Online Mendelian Inheritance in Man), Orphanet, ICD-10 (International Statistical Classification of Diseases and Related Health Problems, rev. 10), MeSH (Medical Subject Headings)
OMIM: 225320 Orphanet: ORPHA:230851 ICD-10: Q79.6 MeSH: C536198

Evidence at
protein level
  Based on available structural and biochemical information, a statement about the existence of an LH enzyme variant bearing the described mutation is provided
This variant does not alter the aminoacid sequence of the enzyme, and therefore is expected to EXIST at the protein level, although no experimental evidence is currently available to support its existence.

Related Entries
  A list of related LH/PLOD variants found matching the structural position of the mutation currently visualized
SiMPLOD1-72: LH1 delta368-372 (Pathogenic)
SiMPLOD1-134: LH1 dupl326-585;TYR455THRFS (Pathogenic)
SiMPLOD1-320: LH1 delta367-443 (Pathogenic)
SiMPLOD1-816: LH1 ARG370GLN (SNP)
SiMPLOD1-817: LH1 ARG370LEU (SNP)
SiMPLOD1-920: LH1 ARG370TRP (Uncertain significance)
SiMPLOD2-228: LH2a ARG380CYS (Pathogenic)
SiMPLOD2-1105: LH2a ARG380LEU (SNP)
SiMPLOD2-1141: LH2a ARG380HIS (SNP)
SiMPLOD3-441: LH3 ARG380GLN (SNP)

Last Update
  An evaluation of the possible effects/implications of the mutations on the LH1 molecular structure
2021-06-23 08:38:51

The three-dimensional visualization is currently based on the homology model of full-length, dimeric human LH1 (generated using the crystal structure of full-length human LH3 as template).

You may select a different PDB model file to visualize the mutation(s) using the drop-down menu below (page will refresh):

LH1 ARG370ARG
SiMPLOD ID This is the unique identifier for this mutation in the SiMPLOD database. Please use this identifier when linking information described in SiMPLOD about this mutation.	SiMPLOD1-37
Isoenzyme Follow the links to gather information about the LH1 isoenzyme	Lysyl Hydroxylase 1 (human) - UniProt - Full Info
Nucleotide mutation Follow the links to explore annotated information about the significance of the PLOD1 c.1110G>A mutation	PLOD1 NM_000302.2:c.1110G>A - NCBI RefSeq NCBI SNP: rs148644646 NCBI ClinVar: 520111
Mutation type Current information about the clinical implications of the mutation	Likely benign
Clinical Databases Link to clinical databases, including OMIM (Online Mendelian Inheritance in Man), Orphanet, ICD-10 (International Statistical Classification of Diseases and Related Health Problems, rev. 10), MeSH (Medical Subject Headings)	OMIM: 225320 Orphanet: ORPHA:230851 ICD-10: Q79.6 MeSH: C536198
Evidence at protein level Based on available structural and biochemical information, a statement about the existence of an LH enzyme variant bearing the described mutation is provided	This variant does not alter the aminoacid sequence of the enzyme, and therefore is expected to EXIST at the protein level, although no experimental evidence is currently available to support its existence.
Related Entries A list of related LH/PLOD variants found matching the structural position of the mutation currently visualized	SiMPLOD1-72: LH1 delta368-372 (Pathogenic) SiMPLOD1-134: LH1 dupl326-585;TYR455THRFS (Pathogenic) SiMPLOD1-320: LH1 delta367-443 (Pathogenic) SiMPLOD1-816: LH1 ARG370GLN (SNP) SiMPLOD1-817: LH1 ARG370LEU (SNP) SiMPLOD1-920: LH1 ARG370TRP (Uncertain significance) SiMPLOD2-228: LH2a ARG380CYS (Pathogenic) SiMPLOD2-1105: LH2a ARG380LEU (SNP) SiMPLOD2-1141: LH2a ARG380HIS (SNP) SiMPLOD3-441: LH3 ARG380GLN (SNP)
Last Update An evaluation of the possible effects/implications of the mutations on the LH1 molecular structure	2021-06-23 08:38:51
The three-dimensional visualization is currently based on the homology model of full-length, dimeric human LH1 (generated using the crystal structure of full-length human LH3 as template). You may select a different PDB model file to visualize the mutation(s) using the drop-down menu below (page will refresh):